Resource

Id DNase-seq/ENCSR749YCRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR749YCR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"]
Description
Labels
  • accession: ENCSR749YCR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour
  • date_created: 2020-04-20T23:45:35.302603+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR749YCR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR749YCR float

DNase-seq_ENCSR749YCR
DNase-seq ENCSR749YCR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR749YCR [0.38, 46.2]
n
6,128,223
mean
6.72
sd
5.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 61282230.19% 33251
chr1 639186 0.26% 3467
chr2 424295 0.18% 2325
chr3 324132 0.16% 1747
chr4 208617 0.11% 1130
chr5 263506 0.15% 1427
chr6 340803 0.20% 1857
chr7 283003 0.18% 1559
chr8 219775 0.15% 1203
chr9 244895 0.18% 1332
chr10 257978 0.19% 1420
chr11 313979 0.23% 1702
chr12 311450 0.23% 1667
chr13 124017 0.11% 671
chr14 216013 0.20% 1160
chr15 201147 0.20% 1102
chr16 256916 0.28% 1397
chr17 384913 0.46% 2096
chr18 93263 0.12% 510
chr19 453879 0.77% 2379
chr20 175389 0.27% 965
chr21 69762 0.15% 376
chr22 150538 0.30% 830
chrX 163788 0.10% 892
chrY 6979 0.01% 37
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33251 2 711 184.3 180
global segment-length histogram

Files

Filename Size md5
ENCFF799MOA.bed.gz 363.97 KB 7363ecf268d1539f65cab2244374e0aa
ENCFF799MOA.tabix.bed.gz 329.56 KB e011e0226324995c633be523c17ef222
ENCFF799MOA.tabix.bed.gz.tbi 184.46 KB 1e3c2768e789c7f8834d9bcae1a6833f
genomic_resource.yaml 2.44 KB a61be9482f63666c2492fed089f3a822
statistics/