Resource

Id DNase-seq/ENCSR744UQKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR744UQK [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR744UQK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-19T18:36:46.769660+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR744UQK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR744UQK float

DNase-seq_ENCSR744UQK
DNase-seq ENCSR744UQK [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR744UQK [0.23, 63.8]
n
7,815,921
mean
7.33
sd
8.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78159210.24% 42251
chr1 804927 0.32% 4363
chr2 550984 0.23% 2971
chr3 410197 0.21% 2232
chr4 265986 0.14% 1416
chr5 334553 0.18% 1830
chr6 445265 0.26% 2399
chr7 359324 0.23% 1961
chr8 280496 0.19% 1544
chr9 317506 0.23% 1724
chr10 331617 0.25% 1813
chr11 405112 0.30% 2207
chr12 394537 0.30% 2107
chr13 152021 0.13% 809
chr14 274412 0.26% 1451
chr15 255708 0.25% 1418
chr16 329501 0.36% 1789
chr17 495046 0.59% 2650
chr18 118336 0.15% 654
chr19 551488 0.94% 2864
chr20 223131 0.35% 1236
chr21 90036 0.19% 490
chr22 197914 0.39% 1086
chrX 227824 0.15% 1237
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42251 7 740 184.99 180
global segment-length histogram

Files

Filename Size md5
ENCFF106XUY.bed.gz 467.09 KB a5570e90b1838c739e52d9a166779be0
ENCFF106XUY.tabix.bed.gz 424.99 KB df33b82be40271235be3208daf40c0e3
ENCFF106XUY.tabix.bed.gz.tbi 213.75 KB 553e0aa7070cfa48144014d8baaa610d
genomic_resource.yaml 1.88 KB 0b5689bed4b75c95b1c9c22543797518
statistics/