Resource

Id DNase-seq/ENCSR742HBKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR742HBK [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (86 years)"]
Description
Labels
  • accession: ENCSR742HBK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (86 years)
  • date_created: 2020-12-10T18:27:51.042572+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR742HBK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (86 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR742HBK float

DNase-seq_ENCSR742HBK
DNase-seq ENCSR742HBK [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (86 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR742HBK [0.0247, 31.1]
n
38,673,564
mean
1.27
sd
2.47

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 386735641.20% 203204
chr1 3514335 1.41% 18215
chr2 3411612 1.41% 17908
chr3 2128110 1.07% 11203
chr4 1250936 0.66% 6636
chr5 2070285 1.14% 10844
chr6 2011291 1.18% 10692
chr7 2068861 1.30% 11076
chr8 1828380 1.26% 9699
chr9 1668831 1.21% 8771
chr10 2496228 1.87% 12975
chr11 2025914 1.50% 10567
chr12 1526005 1.15% 8105
chr13 955613 0.84% 5031
chr14 1247738 1.17% 6609
chr15 1465692 1.44% 7702
chr16 1365149 1.51% 7190
chr17 1656675 1.99% 8698
chr18 1021611 1.27% 5415
chr19 1383206 2.36% 7137
chr20 1304149 2.02% 6742
chr21 530923 1.14% 2811
chr22 1008991 1.99% 5249
chrX 707940 0.45% 3790
chrY 25089 0.04% 139
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 203204 1 1140 190.32 180
global segment-length histogram

Files

Filename Size md5
ENCFF123RHR.bed.gz 2.1 MB 8637bf001d72faf406698f1956a0a94f
ENCFF123RHR.tabix.bed.gz 1.93 MB b81232d9c4f7ceb0c2fd3f5121e5ce93
ENCFF123RHR.tabix.bed.gz.tbi 456.78 KB 7e39b696bf059a88a813d6e4b60a036f
genomic_resource.yaml 1.25 KB 793d172c011b2036887c7ea4f740affa
statistics/