Resource

Id DNase-seq/ENCSR739VKYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR739VKY [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
Description
Labels
  • accession: ENCSR739VKY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000788/
  • biosample_summary: Homo sapiens naive B cell female adult (39 years)
  • date_created: 2021-08-23T23:11:18.337088+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR739VKY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR739VKY float

DNase-seq_ENCSR739VKY
DNase-seq ENCSR739VKY [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR739VKY [0.0945, 28.7]
n
11,855,270
mean
2.91
sd
3.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 118552700.37% 59091
chr1 1157522 0.46% 5750
chr2 861530 0.36% 4290
chr3 662792 0.33% 3328
chr4 460925 0.24% 2355
chr5 556930 0.31% 2791
chr6 735826 0.43% 3636
chr7 575540 0.36% 2888
chr8 467005 0.32% 2365
chr9 467190 0.34% 2362
chr10 518038 0.39% 2584
chr11 587105 0.43% 2946
chr12 624204 0.47% 3096
chr13 235858 0.21% 1183
chr14 412201 0.39% 2029
chr15 376624 0.37% 1885
chr16 469195 0.52% 2335
chr17 664846 0.80% 3278
chr18 218288 0.27% 1088
chr19 723466 1.23% 3448
chr20 311700 0.48% 1589
chr21 131478 0.28% 668
chr22 284962 0.56% 1431
chrX 351785 0.23% 1764
chrY 260 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59091 1 960 200.63 200
global segment-length histogram

Files

Filename Size md5
ENCFF642YJJ.bed.gz 656.7 KB 48721f3d9ae5257ffe4acc4cdb600cad
ENCFF642YJJ.tabix.bed.gz 601.68 KB 3d618dbd1de9cfd6350ec628f892b4f3
ENCFF642YJJ.tabix.bed.gz.tbi 266.19 KB 11de95ebd55dc68bc0fcd048b1ce355e
genomic_resource.yaml 2.02 KB ff63d45de9800627af13da780ad528e0
statistics/