Resource

Id DNase-seq/ENCSR735MJZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR735MJZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
Description
Labels
  • accession: ENCSR735MJZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • date_created: 2020-04-19T18:36:48.328797+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR735MJZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR735MJZ float

DNase-seq_ENCSR735MJZ
DNase-seq ENCSR735MJZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR735MJZ [0.486, 74.7]
n
6,317,642
mean
8.73
sd
9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63176420.20% 34780
chr1 648876 0.26% 3577
chr2 438308 0.18% 2432
chr3 335249 0.17% 1860
chr4 209108 0.11% 1158
chr5 266736 0.15% 1495
chr6 371667 0.22% 2041
chr7 285471 0.18% 1565
chr8 229534 0.16% 1269
chr9 254714 0.18% 1416
chr10 268050 0.20% 1500
chr11 322183 0.24% 1768
chr12 325612 0.24% 1784
chr13 128286 0.11% 697
chr14 213609 0.20% 1178
chr15 196314 0.19% 1090
chr16 280421 0.31% 1517
chr17 400917 0.48% 2191
chr18 90939 0.11% 500
chr19 462200 0.79% 2462
chr20 180952 0.28% 1019
chr21 70444 0.15% 394
chr22 157755 0.31% 886
chrX 180297 0.12% 981
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34780 10 640 181.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF082SFU.bed.gz 384.31 KB cc22ec53cb681519c4230095b2ebe7ec
ENCFF082SFU.tabix.bed.gz 345.68 KB 95c328261f226d19da02c8e09e2e9287
ENCFF082SFU.tabix.bed.gz.tbi 184.49 KB ac66c1c042b02592954b21d3b9de4a9d
genomic_resource.yaml 2.46 KB 6bfb8ee25bc7d4f2b6d5ce93f2e2c71d
statistics/