Resource
| Id | DNase-seq/ENCSR732RIC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR732RIC [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF868TSB|/files/ENCFF868TSB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR732RIC | float |
DNase-seq_ENCSR732RIC |
DNase-seq ENCSR732RIC [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"]
|
 |
[0.0405, 13.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16766015 | 0.52% | 78438 |
| chr1 | 1605293 | 0.64% | 7357 |
| chr2 | 1373297 | 0.57% | 6535 |
| chr3 | 934427 | 0.47% | 4412 |
| chr4 | 546431 | 0.29% | 2577 |
| chr5 | 762836 | 0.42% | 3630 |
| chr6 | 850600 | 0.50% | 3984 |
| chr7 | 793255 | 0.50% | 3822 |
| chr8 | 643437 | 0.44% | 3034 |
| chr9 | 710477 | 0.51% | 3287 |
| chr10 | 905304 | 0.68% | 4270 |
| chr11 | 900343 | 0.67% | 4136 |
| chr12 | 774107 | 0.58% | 3616 |
| chr13 | 305748 | 0.27% | 1480 |
| chr14 | 570049 | 0.53% | 2613 |
| chr15 | 691665 | 0.68% | 3230 |
| chr16 | 615294 | 0.68% | 2854 |
| chr17 | 884862 | 1.06% | 4075 |
| chr18 | 325038 | 0.40% | 1598 |
| chr19 | 915238 | 1.56% | 4079 |
| chr20 | 522529 | 0.81% | 2458 |
| chr21 | 242110 | 0.52% | 1152 |
| chr22 | 474517 | 0.93% | 2219 |
| chrX | 418770 | 0.27% | 2017 |
| chrY | 388 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 78438 | 1 | 1180 | 213.75 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF608SOD.bed.gz | 843.96 KB | 53e3613d3951e6b39f55518214bef7b3 |
| ENCFF608SOD.tabix.bed.gz | 784.92 KB | 4c2ced143caf55c254d5e63492a7ed22 |
| ENCFF608SOD.tabix.bed.gz.tbi | 272.83 KB | 0f75652625b94dae95e037a9f5d8a2a6 |
| genomic_resource.yaml | 2.02 KB | 767d0021799de6b9f6b0dc26041e9398 |
| statistics/ |