Resource

Id DNase-seq/ENCSR732IFVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR732IFV [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR732IFV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000660/
  • biosample_summary: Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:08.353320+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR732IFV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously CL:0000905 (effector memory CD4-positive, alpha-beta T cell). It has been updated to NTR:0000660 (activated effector memory CD4-positive, alpha-beta T cell) on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR732IFV float

DNase-seq_ENCSR732IFV
DNase-seq ENCSR732IFV [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR732IFV [0.029, 64.1]
n
34,643,791
mean
1.92
sd
5.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 346437911.08% 170833
chr1 3279567 1.32% 16190
chr2 2955060 1.22% 14407
chr3 1643537 0.83% 8142
chr4 1045379 0.55% 5074
chr5 1460587 0.80% 7308
chr6 1427291 0.84% 7149
chr7 1784683 1.12% 8677
chr8 1419234 0.98% 6932
chr9 1573472 1.14% 7617
chr10 1846673 1.38% 9125
chr11 1962451 1.45% 9541
chr12 1463879 1.10% 7274
chr13 608104 0.53% 3022
chr14 1289235 1.20% 6297
chr15 1264352 1.24% 6393
chr16 1408955 1.56% 7023
chr17 2224491 2.67% 10933
chr18 553406 0.69% 2776
chr19 1536297 2.62% 7611
chr20 1242154 1.93% 6242
chr21 624129 1.34% 3089
chr22 1451136 2.86% 7031
chrX 562301 0.36% 2885
chrY 17418 0.03% 95
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 170833 1 1260 202.79 190
global segment-length histogram

Files

Filename Size md5
ENCFF505CPA.bed.gz 1.69 MB d417973775d05502414116bf7a810549
ENCFF505CPA.tabix.bed.gz 1.58 MB 93c787a97a4f77fa9cec30680248f7ed
ENCFF505CPA.tabix.bed.gz.tbi 287.37 KB 4fddd7f8980b91989a38dbb8090d883e
genomic_resource.yaml 2.06 KB 65c2b2391c748e0364e4ff5820e3f33e
statistics/