Resource

Id DNase-seq/ENCSR724CNDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR724CND [biosample_summary="Homo sapiens foreskin keratinocyte male newborn"]
Description
Labels
  • accession: ENCSR724CND
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-16T21:42:14.332791+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR724CND
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR724CND float

DNase-seq_ENCSR724CND

DNase-seq ENCSR724CND [biosample_summary="Homo sapiens foreskin keratinocyte male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR724CND [0.116, 60.6]
n
23,511,904
mean
2.28
sd
2.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 235119040.73% 116573
chr1 2174461 0.87% 10763
chr2 1955137 0.81% 9751
chr3 1616461 0.82% 7995
chr4 1426800 0.75% 7136
chr5 1399456 0.77% 6942
chr6 1510426 0.88% 7466
chr7 1187342 0.75% 5954
chr8 1093665 0.75% 5382
chr9 990224 0.72% 4958
chr10 1095725 0.82% 5486
chr11 1140651 0.84% 5642
chr12 1200824 0.90% 5852
chr13 678868 0.59% 3410
chr14 733231 0.68% 3612
chr15 748492 0.73% 3677
chr16 654984 0.73% 3286
chr17 836993 1.01% 4084
chr18 587749 0.73% 2942
chr19 623530 1.06% 2985
chr20 569055 0.88% 2793
chr21 288899 0.62% 1417
chr22 340185 0.67% 1705
chrX 609981 0.39% 3076
chrY 48765 0.09% 259
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116573 1 957 201.69 200
global segment-length histogram

Files

Filename Size md5
ENCFF887VWU.bed.gz 1.22 MB d5abca0469a6a8c4f3fcf45f24b25b08
ENCFF887VWU.tabix.bed.gz 1.1 MB ad14f5ba62bb71a4457f2db59ac4873d
ENCFF887VWU.tabix.bed.gz.tbi 509.0 KB bc4a02322d450580dffe71aeec71440e
genomic_resource.yaml 1.18 KB b0d4d201e9554306986703a5314d952a
statistics/