Resource

Id DNase-seq/ENCSR715TMHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR715TMH [biosample_summary="Homo sapiens T-cell female adult (32 years)"]
Description
Labels
  • accession: ENCSR715TMH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (32 years)
  • date_created: 2020-04-12T19:00:09.674823+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR715TMH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (32 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR715TMH float

DNase-seq_ENCSR715TMH
DNase-seq ENCSR715TMH [biosample_summary="Homo sapiens T-cell female adult (32 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR715TMH [0.205, 124]
n
8,865,422
mean
10.1
sd
13.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88654220.28% 50289
chr1 900510 0.36% 5083
chr2 626244 0.26% 3565
chr3 477744 0.24% 2712
chr4 301031 0.16% 1705
chr5 400114 0.22% 2271
chr6 516171 0.30% 2930
chr7 411483 0.26% 2347
chr8 324420 0.22% 1863
chr9 353424 0.26% 2015
chr10 395295 0.30% 2256
chr11 455422 0.34% 2581
chr12 448485 0.34% 2541
chr13 177147 0.15% 1007
chr14 311224 0.29% 1744
chr15 283451 0.28% 1637
chr16 361832 0.40% 2055
chr17 538884 0.65% 3044
chr18 144361 0.18% 835
chr19 589836 1.01% 3237
chr20 252896 0.39% 1452
chr21 108174 0.23% 625
chr22 219943 0.43% 1262
chrX 267233 0.17% 1521
chrY 98 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50289 4 700 176.29 177
global segment-length histogram

Files

Filename Size md5
ENCFF220XPZ.bed.gz 562.72 KB dc0c207a2a9f56a63c8e78e87fb8e5e7
ENCFF220XPZ.tabix.bed.gz 510.95 KB f68fefb4ef6f2b5b11011020f3e145c8
ENCFF220XPZ.tabix.bed.gz.tbi 241.07 KB c48c337fbeced23b19bc615d6a80d3fb
genomic_resource.yaml 1.8 KB 759ba48229ec40cf24109c42af59decf
statistics/