Resource

Id DNase-seq/ENCSR713KNQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR713KNQ [biosample_summary="Homo sapiens aorta tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR713KNQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000947/
  • biosample_summary: Homo sapiens aorta tissue female adult (41 years)
  • date_created: 2019-02-01T18:31:55.953946+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR713KNQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR713KNQ float

DNase-seq_ENCSR713KNQ

DNase-seq ENCSR713KNQ [biosample_summary="Homo sapiens aorta tissue female adult (41 years)"]
HISTOGRAM FOR DNase-seq_ENCSR713KNQ [0.0341, 39]
n
28,388,564
mean
1.67
sd
2.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 283885640.88% 149699
chr1 2590333 1.04% 13663
chr2 2038829 0.84% 10923
chr3 1448379 0.73% 7821
chr4 958313 0.50% 4955
chr5 1237727 0.68% 6730
chr6 1119564 0.66% 6087
chr7 1450347 0.91% 7650
chr8 1189162 0.82% 6198
chr9 1371645 0.99% 7175
chr10 1415678 1.06% 7524
chr11 1796145 1.33% 9290
chr12 1264171 0.95% 6732
chr13 453880 0.40% 2441
chr14 1000518 0.93% 5196
chr15 952132 0.93% 5113
chr16 1378864 1.53% 7220
chr17 1717411 2.06% 9034
chr18 415243 0.52% 2223
chr19 1381956 2.36% 7121
chr20 955561 1.48% 4936
chr21 550444 1.18% 2754
chr22 1120147 2.20% 5744
chrX 579796 0.37% 3148
chrY 2319 <0.01% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 149699 2 980 189.64 180
global segment-length histogram

Files

Filename Size md5
ENCFF829CJM.bed.gz 1.54 MB aa90ec3a8f0c6f4a3581ffac184fb7ab
ENCFF829CJM.tabix.bed.gz 1.42 MB 75a2232b5fc1316c51f20b68ba8950c0
ENCFF829CJM.tabix.bed.gz.tbi 342.07 KB 2c38d9ba4b3bd999dc62884efda72cc2
genomic_resource.yaml 1.21 KB 2b89321c262391cbe097bde3b17adf36
statistics/