Resource

Id DNase-seq/ENCSR711AQMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR711AQM [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years)"]
Description
Labels
  • accession: ENCSR711AQM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (21 years)
  • date_created: 2018-11-29T17:34:35.762567+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR711AQM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment: This dataset was originally submitted with 3 anisogenic replicates. The second and third replicates have been moved to ENCSR367FKP.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR711AQM float

DNase-seq_ENCSR711AQM

DNase-seq ENCSR711AQM [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR711AQM [0.0216, 23.7]
n
41,562,626
mean
1.53
sd
2.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 415626261.29% 221270
chr1 3972264 1.60% 21174
chr2 3389088 1.40% 18119
chr3 2739112 1.38% 14626
chr4 1832803 0.96% 9921
chr5 2222319 1.22% 11909
chr6 2554866 1.50% 13549
chr7 2019433 1.27% 10789
chr8 1937149 1.33% 10292
chr9 1719827 1.24% 9135
chr10 2067412 1.55% 10987
chr11 2016422 1.49% 10646
chr12 2129863 1.60% 11302
chr13 1004928 0.88% 5408
chr14 1328265 1.24% 7057
chr15 1395985 1.37% 7450
chr16 1316232 1.46% 6953
chr17 1894506 2.28% 9983
chr18 875545 1.09% 4701
chr19 1475308 2.52% 7638
chr20 1138183 1.77% 6089
chr21 486817 1.04% 2581
chr22 766426 1.51% 4015
chrX 1231749 0.79% 6682
chrY 48124 0.08% 264
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 221270 1 960 187.84 180
global segment-length histogram

Files

Filename Size md5
ENCFF583QBN.bed.gz 2.41 MB a95105adccff479868c0dfdbc223264c
ENCFF583QBN.tabix.bed.gz 2.19 MB 1374be26a83e471f3d817bb84ee410ff
ENCFF583QBN.tabix.bed.gz.tbi 590.67 KB 80dcd3130312c9cbf2f3641ecdeaacb7
genomic_resource.yaml 1.36 KB fe85b5b18c90c30ed001525d339513f9
statistics/