Resource

Id DNase-seq/ENCSR705GCUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR705GCU [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR705GCU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000909/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta memory T cell male adult (30 years)
  • date_created: 2019-08-24T00:09:40.911781+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR705GCU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR705GCU float

DNase-seq_ENCSR705GCU
DNase-seq ENCSR705GCU [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell male adult (30 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR705GCU [0.0342, 107]
n
18,649,890
mean
3.67
sd
8.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 186498900.58% 98890
chr1 1752738 0.70% 9325
chr2 1377245 0.57% 7347
chr3 884078 0.45% 4699
chr4 636502 0.33% 3389
chr5 777258 0.43% 4146
chr6 815383 0.48% 4333
chr7 979050 0.61% 5172
chr8 731316 0.50% 3828
chr9 777039 0.56% 4098
chr10 886270 0.66% 4691
chr11 1246031 0.92% 6568
chr12 815519 0.61% 4349
chr13 312752 0.27% 1670
chr14 701187 0.66% 3671
chr15 539701 0.53% 2945
chr16 863720 0.96% 4627
chr17 1178000 1.41% 6220
chr18 280198 0.35% 1475
chr19 984252 1.68% 5106
chr20 673094 1.04% 3613
chr21 374182 0.80% 1969
chr22 661186 1.30% 3534
chrX 387550 0.25% 2027
chrY 15639 0.03% 88
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98890 1 900 188.59 180
global segment-length histogram

Files

Filename Size md5
ENCFF931AKV.bed.gz 1.04 MB 599fab38921dbbcfc057186595dab2af
ENCFF931AKV.tabix.bed.gz 975.72 KB a016f6335a132bec464999e12335804b
ENCFF931AKV.tabix.bed.gz.tbi 252.15 KB 2c980239c60574d2dceb751fd3e92e63
genomic_resource.yaml 1.28 KB 86ec2e3a4858e08ef150342a99676060
statistics/