Resource

Id DNase-seq/ENCSR703AYZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR703AYZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
Description
Labels
  • accession: ENCSR703AYZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • date_created: 2020-04-20T23:46:00.778424+00:00
  • date_released: 2020-09-19
  • doi: 10.17989/ENCSR703AYZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR703AYZ float

DNase-seq_ENCSR703AYZ
DNase-seq ENCSR703AYZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR703AYZ [0.0658, 46.1]
n
14,736,778
mean
3.67
sd
5.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 147367780.46% 77551
chr1 1468106 0.59% 7677
chr2 1063234 0.44% 5625
chr3 835691 0.42% 4422
chr4 513435 0.27% 2721
chr5 667268 0.37% 3558
chr6 884776 0.52% 4650
chr7 657429 0.41% 3539
chr8 577268 0.40% 3050
chr9 591618 0.43% 3120
chr10 702981 0.53% 3682
chr11 734016 0.54% 3892
chr12 758290 0.57% 3934
chr13 296208 0.26% 1577
chr14 509950 0.48% 2673
chr15 495980 0.49% 2611
chr16 592077 0.66% 3087
chr17 848647 1.02% 4415
chr18 239185 0.30% 1274
chr19 859565 1.47% 4388
chr20 411780 0.64% 2214
chr21 182650 0.39% 966
chr22 358430 0.71% 1889
chrX 469971 0.30% 2489
chrY 18223 0.03% 98
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 77551 1 840 190.03 180
global segment-length histogram

Files

Filename Size md5
ENCFF940ORM.bed.gz 870.84 KB cdc7087dc0b6f9474562c9a51135161d
ENCFF940ORM.tabix.bed.gz 795.15 KB 846180ecb4581636ff19a6809bdbcc3b
ENCFF940ORM.tabix.bed.gz.tbi 300.47 KB b35cde3f269c446879e2dfba685895c4
genomic_resource.yaml 1.83 KB e9869f2716b54bab49a452bc6c797d97
statistics/