Resource

Id DNase-seq/ENCSR698VDMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR698VDM [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR698VDM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-20T23:45:45.141643+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR698VDM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR698VDM float

DNase-seq_ENCSR698VDM
DNase-seq ENCSR698VDM [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR698VDM [0.146, 86.3]
n
9,421,206
mean
7.52
sd
9.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 94212060.29% 52508
chr1 961635 0.39% 5359
chr2 662977 0.27% 3710
chr3 511398 0.26% 2857
chr4 324114 0.17% 1792
chr5 413299 0.23% 2318
chr6 567781 0.33% 3138
chr7 414345 0.26% 2342
chr8 351350 0.24% 1981
chr9 373364 0.27% 2075
chr10 424560 0.32% 2388
chr11 468683 0.35% 2615
chr12 493944 0.37% 2747
chr13 194226 0.17% 1093
chr14 331656 0.31% 1831
chr15 300692 0.29% 1711
chr16 389649 0.43% 2161
chr17 575206 0.69% 3178
chr18 146652 0.18% 835
chr19 608620 1.04% 3285
chr20 264809 0.41% 1499
chr21 114802 0.25% 639
chr22 229988 0.45% 1278
chrX 287613 0.18% 1618
chrY 9843 0.02% 58
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52508 7 904 179.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF263UIX.bed.gz 587.98 KB 688c9b10bd9c3910cf4ab05c26a27f63
ENCFF263UIX.tabix.bed.gz 539.07 KB 94efbda52139f28cb3281f27c1fca2bd
ENCFF263UIX.tabix.bed.gz.tbi 238.37 KB ce8b36215512863f57809b7b7ba872ee
genomic_resource.yaml 1.77 KB 4048b20f18746d36b43f2f2f053eb80e
statistics/