Resource

Id DNase-seq/ENCSR697FMEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR697FME [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR697FME
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:36:51.688340+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR697FME
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR697FME float

DNase-seq_ENCSR697FME
DNase-seq ENCSR697FME [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR697FME [0.281, 107]
n
7,891,113
mean
9.61
sd
12.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78911130.25% 43717
chr1 801070 0.32% 4453
chr2 539612 0.22% 3006
chr3 417414 0.21% 2314
chr4 258773 0.14% 1426
chr5 346202 0.19% 1912
chr6 446331 0.26% 2465
chr7 358589 0.23% 1980
chr8 287188 0.20% 1623
chr9 321032 0.23% 1785
chr10 345337 0.26% 1938
chr11 415794 0.31% 2293
chr12 397414 0.30% 2200
chr13 157814 0.14% 884
chr14 273770 0.26% 1501
chr15 257001 0.25% 1449
chr16 336603 0.37% 1848
chr17 502830 0.60% 2756
chr18 115130 0.14% 635
chr19 546163 0.93% 2938
chr20 225377 0.35% 1283
chr21 96595 0.21% 539
chr22 203505 0.40% 1143
chrX 233029 0.15% 1297
chrY 8540 0.01% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43717 16 640 180.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF632GSK.bed.gz 492.29 KB 30f8735107d55df749cf2d257def8336
ENCFF632GSK.tabix.bed.gz 445.42 KB b77ae53b4f1ffa4af57ced1bfeb4fbce
ENCFF632GSK.tabix.bed.gz.tbi 217.7 KB 1ca6bc9484846a03a83637d95ae142df
genomic_resource.yaml 1.87 KB e3c2617020476d5f1c86839e0aedb4fd
statistics/