Resource
| Id | DNase-seq/ENCSR694LFE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR694LFE [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF671AXT|/files/ENCFF671AXT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR694LFE | float |
DNase-seq_ENCSR694LFE |
DNase-seq ENCSR694LFE [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)"]
|
 |
[0.0333, 19.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34751465 | 1.08% | 166528 |
| chr1 | 3127936 | 1.26% | 14835 |
| chr2 | 3288912 | 1.36% | 15497 |
| chr3 | 1976045 | 1.00% | 9463 |
| chr4 | 879574 | 0.46% | 4299 |
| chr5 | 1738239 | 0.96% | 8283 |
| chr6 | 1559457 | 0.91% | 7588 |
| chr7 | 1751164 | 1.10% | 8553 |
| chr8 | 1522967 | 1.05% | 7421 |
| chr9 | 1524457 | 1.10% | 7271 |
| chr10 | 2343722 | 1.75% | 11184 |
| chr11 | 1911533 | 1.42% | 8931 |
| chr12 | 1344249 | 1.01% | 6543 |
| chr13 | 785847 | 0.69% | 3773 |
| chr14 | 1052232 | 0.98% | 5084 |
| chr15 | 1488373 | 1.46% | 7211 |
| chr16 | 1296350 | 1.43% | 6313 |
| chr17 | 1708343 | 2.05% | 8203 |
| chr18 | 913998 | 1.14% | 4353 |
| chr19 | 1324499 | 2.26% | 6397 |
| chr20 | 1144924 | 1.78% | 5494 |
| chr21 | 566319 | 1.21% | 2718 |
| chr22 | 1046726 | 2.06% | 4874 |
| chrX | 443148 | 0.28% | 2167 |
| chrY | 12451 | 0.02% | 73 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 166528 | 1 | 1480 | 208.68 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF627FIO.bed.gz | 1.61 MB | e73f0994bb0e7bbc29a77c511e89015e |
| ENCFF627FIO.tabix.bed.gz | 1.51 MB | 6eee8b6aca4d59504412d15bfa4b714c |
| ENCFF627FIO.tabix.bed.gz.tbi | 313.58 KB | 28f692c843572257492388d5f729f0f9 |
| genomic_resource.yaml | 2.06 KB | 98da255b27d15c58abdd6792d3c7964b |
| statistics/ |