Resource
| Id | DNase-seq/ENCSR693UHT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR693UHT [biosample_summary="Homo sapiens omental fat pad tissue female adult (51 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN615IWQ|/analyses/ENCAN615IWQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF344IWY|/files/ENCFF344IWY/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL202DNS|/pipelines/ENCPL202DNS/} ) for GRCh38 assembly has 39095848 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR693UHT | float |
DNase-seq_ENCSR693UHT |
DNase-seq ENCSR693UHT [biosample_summary="Homo sapiens omental fat pad tissue female adult (51 years)"]
|
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[7, 1.51e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1421563 | 0.04% | 9452 |
| chr1 | 152412 | 0.06% | 1017 |
| chr2 | 95448 | 0.04% | 637 |
| chr3 | 82073 | 0.04% | 546 |
| chr4 | 53670 | 0.03% | 358 |
| chr5 | 62652 | 0.03% | 417 |
| chr6 | 73938 | 0.04% | 491 |
| chr7 | 69773 | 0.04% | 465 |
| chr8 | 48435 | 0.03% | 322 |
| chr9 | 58438 | 0.04% | 390 |
| chr10 | 51750 | 0.04% | 343 |
| chr11 | 81801 | 0.06% | 542 |
| chr12 | 77314 | 0.06% | 513 |
| chr13 | 27150 | 0.02% | 180 |
| chr14 | 44550 | 0.04% | 297 |
| chr15 | 46154 | 0.05% | 305 |
| chr16 | 62896 | 0.07% | 418 |
| chr17 | 80363 | 0.10% | 533 |
| chr18 | 22950 | 0.03% | 153 |
| chr19 | 122939 | 0.21% | 816 |
| chr20 | 37050 | 0.06% | 247 |
| chr21 | 12130 | 0.03% | 81 |
| chr22 | 28727 | 0.06% | 190 |
| chrX | 28350 | 0.02% | 187 |
| chrY | 600 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 9452 | 23 | 377 | 150.4 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF188LZJ.bed.gz | 99.44 KB | 3635b5d6f504d70a271761731d25adbf |
| ENCFF188LZJ.tabix.bed.gz | 83.05 KB | 7568fcb266d4b7ebc36a10b3f47df189 |
| ENCFF188LZJ.tabix.bed.gz.tbi | 77.79 KB | 29792f750dc7afc1e8770c1c48732652 |
| genomic_resource.yaml | 2.01 KB | 648fd1381ada3d65ba70985de89e7ac1 |
| statistics/ |
