Resource
| Id | DNase-seq/ENCSR692PKU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR692PKU [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 16 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF996PZC|/files/ENCFF996PZC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR692PKU | float |
DNase-seq_ENCSR692PKU |
DNase-seq ENCSR692PKU [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.0527, 30] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11206946 | 0.35% | 54164 |
| chr1 | 1151799 | 0.46% | 5519 |
| chr2 | 799098 | 0.33% | 3923 |
| chr3 | 610759 | 0.31% | 2965 |
| chr4 | 374845 | 0.20% | 1779 |
| chr5 | 503905 | 0.28% | 2439 |
| chr6 | 652164 | 0.38% | 3112 |
| chr7 | 505074 | 0.32% | 2457 |
| chr8 | 420378 | 0.29% | 2056 |
| chr9 | 443322 | 0.32% | 2155 |
| chr10 | 527666 | 0.39% | 2536 |
| chr11 | 571708 | 0.42% | 2786 |
| chr12 | 571456 | 0.43% | 2750 |
| chr13 | 226246 | 0.20% | 1096 |
| chr14 | 397735 | 0.37% | 1915 |
| chr15 | 372602 | 0.37% | 1830 |
| chr16 | 446615 | 0.49% | 2151 |
| chr17 | 664013 | 0.80% | 3155 |
| chr18 | 173047 | 0.22% | 858 |
| chr19 | 696346 | 1.19% | 3293 |
| chr20 | 304100 | 0.47% | 1489 |
| chr21 | 131668 | 0.28% | 648 |
| chr22 | 291946 | 0.57% | 1418 |
| chrX | 355117 | 0.23% | 1763 |
| chrY | 15337 | 0.03% | 71 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 54164 | 2 | 867 | 206.91 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF211UBZ.bed.gz | 607.31 KB | b6c806d80398f630f46041bc48ec7343 |
| ENCFF211UBZ.tabix.bed.gz | 557.83 KB | 8a58a7d09ede76c3b1c3387ed56911ff |
| ENCFF211UBZ.tabix.bed.gz.tbi | 240.78 KB | ab7b98f673c6daf8a057b720b72da928 |
| genomic_resource.yaml | 2.62 KB | 690972a31695f7cf6cefc3cf58bf196d |
| statistics/ |