Resource

Id DNase-seq/ENCSR689DSMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR689DSM [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR689DSM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue female adult (53 years)
  • date_created: 2019-07-29T20:41:32.590912+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR689DSM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR689DSM float

DNase-seq_ENCSR689DSM

DNase-seq ENCSR689DSM [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (53 years)"]
HISTOGRAM FOR DNase-seq_ENCSR689DSM [0.0304, 42.7]
n
36,552,325
mean
1.45
sd
2.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 365523251.14% 189654
chr1 3487166 1.40% 17997
chr2 3028751 1.25% 15765
chr3 1825129 0.92% 9625
chr4 1115894 0.59% 5855
chr5 1651233 0.91% 8599
chr6 1612276 0.94% 8572
chr7 1785844 1.12% 9358
chr8 1485928 1.02% 7718
chr9 1709309 1.24% 8731
chr10 2096124 1.57% 10827
chr11 2047701 1.52% 10482
chr12 1497515 1.12% 7970
chr13 682668 0.60% 3608
chr14 1290376 1.21% 6693
chr15 1441413 1.41% 7495
chr16 1588251 1.76% 8335
chr17 2170961 2.61% 11127
chr18 697247 0.87% 3632
chr19 1482807 2.53% 7590
chr20 1165274 1.81% 6088
chr21 561604 1.20% 2763
chr22 1373168 2.70% 6809
chrX 754574 0.48% 4005
chrY 1112 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 189654 1 1140 192.73 180
global segment-length histogram

Files

Filename Size md5
ENCFF830VSE.bed.gz 1.94 MB 8a3df4e2dfd18fd615e3bd5d7a437013
ENCFF830VSE.tabix.bed.gz 1.79 MB 3fdb7fdd08d5b6e2213e0bda52ca8a51
ENCFF830VSE.tabix.bed.gz.tbi 391.03 KB 2397b5dac2a1d6a270dd6d42247a1a86
genomic_resource.yaml 1.23 KB 62a5d73348ab90bc4bd83fc750d0f7cb
statistics/