Resource

Id DNase-seq/ENCSR688AWPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR688AWP [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR688AWP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-15T22:21:54.358601+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR688AWP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR688AWP float

DNase-seq_ENCSR688AWP
DNase-seq ENCSR688AWP [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR688AWP [0.0447, 32.7]
n
23,644,274
mean
2.1
sd
2.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 236442740.73% 133165
chr1 2209040 0.89% 12311
chr2 1820061 0.75% 10344
chr3 1448151 0.73% 8199
chr4 1011541 0.53% 5770
chr5 1207491 0.67% 6872
chr6 1304096 0.76% 7382
chr7 1237746 0.78% 7069
chr8 1057197 0.73% 6009
chr9 1020409 0.74% 5748
chr10 1164919 0.87% 6625
chr11 1324067 0.98% 7423
chr12 1141792 0.86% 6402
chr13 546716 0.48% 3117
chr14 781013 0.73% 4399
chr15 774196 0.76% 4353
chr16 916861 1.01% 5137
chr17 1111149 1.33% 6152
chr18 503991 0.63% 2893
chr19 1016341 1.73% 5386
chr20 684984 1.06% 3865
chr21 258279 0.55% 1484
chr22 528363 1.04% 2947
chrX 575361 0.37% 3274
chrY 510 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133165 1 780 177.56 180
global segment-length histogram

Files

Filename Size md5
ENCFF083DFD.bed.gz 1.44 MB 709107bb0ef3321ba2fb7b8d6766cdc4
ENCFF083DFD.tabix.bed.gz 1.31 MB 65d3ed48bf452229c0bdbc5238a59432
ENCFF083DFD.tabix.bed.gz.tbi 495.54 KB b3707a3add8aae1d86debe6877901993
genomic_resource.yaml 1.31 KB 9f5cb6b3a566c5cdef8684c48d38a2c6
statistics/