Resource

Id DNase-seq/ENCSR683QJJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR683QJJ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)"]
Description
Labels
  • accession: ENCSR683QJJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)
  • date_created: 2015-09-16T21:42:03.400606+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR683QJJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR683QJJ float

DNase-seq_ENCSR683QJJ
DNase-seq ENCSR683QJJ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR683QJJ [6, 4.89e+04]
n
29,631,644
mean
868
sd
2.27e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 296316440.92% 197287
chr1 2816429 1.13% 18754
chr2 2310370 0.95% 15385
chr3 1775117 0.90% 11812
chr4 1278879 0.67% 8509
chr5 1523838 0.84% 10150
chr6 1803074 1.06% 12004
chr7 1451720 0.91% 9668
chr8 1245864 0.86% 8295
chr9 1202669 0.87% 8008
chr10 1411229 1.05% 9399
chr11 1455866 1.08% 9694
chr12 1486233 1.12% 9900
chr13 733304 0.64% 4877
chr14 1008131 0.94% 6717
chr15 941657 0.92% 6272
chr16 1016658 1.13% 6770
chr17 1512020 1.82% 10067
chr18 586532 0.73% 3908
chr19 1290312 2.20% 8590
chr20 810223 1.26% 5396
chr21 363078 0.78% 2416
chr22 615648 1.21% 4094
chrX 933843 0.60% 6210
chrY 58950 0.10% 392
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 197287 14 300 150.2 150
global segment-length histogram

Files

Filename Size md5
ENCFF773JYF.bed.gz 1.91 MB 520ff51d0f8ccbd965340395a04e605a
ENCFF773JYF.tabix.bed.gz 1.65 MB 8035b1f82025c141d9823e4aeb6b99da
ENCFF773JYF.tabix.bed.gz.tbi 550.5 KB 63057efa3c15f80f6b1bf9f06b1262b9
genomic_resource.yaml 1.43 KB 3e39a94e49b4a85320451c50241ee678
statistics/