Resource

Id DNase-seq/ENCSR678PDDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR678PDD [biosample_summary="Homo sapiens spinal cord tissue female embryo (113 days)"]
Description
Labels
  • accession: ENCSR678PDD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002240/
  • biosample_summary: Homo sapiens spinal cord tissue female embryo (113 days)
  • date_created: 2015-09-16T21:42:56.299311+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR678PDD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR678PDD float

DNase-seq_ENCSR678PDD
DNase-seq ENCSR678PDD [biosample_summary="Homo sapiens spinal cord tissue female embryo (113 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR678PDD [1, 2.47e+04]
n
55,745,548
mean
233
sd
466

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 557455481.73% 370999
chr1 4738267 1.90% 31539
chr2 4769500 1.97% 31747
chr3 3769499 1.90% 25078
chr4 3169972 1.67% 21090
chr5 3392861 1.87% 22580
chr6 3324655 1.95% 22127
chr7 2964657 1.86% 19734
chr8 2770493 1.91% 18444
chr9 2330563 1.68% 15513
chr10 2723735 2.04% 18133
chr11 2772473 2.05% 18447
chr12 2653120 1.99% 17648
chr13 1706036 1.49% 11349
chr14 1785987 1.67% 11879
chr15 1699583 1.67% 11311
chr16 1725912 1.91% 11486
chr17 1971567 2.37% 13123
chr18 1434016 1.78% 9542
chr19 1270535 2.17% 8456
chr20 1422061 2.21% 9480
chr21 675031 1.45% 4497
chr22 870393 1.71% 5796
chrX 1773882 1.14% 11795
chrY 30750 0.05% 205
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 370999 1 450 150.26 150
global segment-length histogram

Files

Filename Size md5
ENCFF789TOW.bed.gz 3.51 MB 90211a2285f4a8a1049ace79d801aadb
ENCFF789TOW.tabix.bed.gz 3.03 MB 7a6dc030dcbd1584d9e45a0b6a89b825
ENCFF789TOW.tabix.bed.gz.tbi 892.21 KB 0dd4841bea834c716266c0836cffb630
genomic_resource.yaml 1.4 KB 6ae96134505674a32851f52b6caa3b42
statistics/