Resource

Id DNase-seq/ENCSR672EWYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR672EWY [biosample_summary="Homo sapiens HFFc6"]
Description
Labels
  • accession: ENCSR672EWY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0009318/
  • biosample_summary: Homo sapiens HFFc6
  • date_created: 2018-10-01T18:06:37.883326+00:00
  • date_released: 2018-10-19
  • doi: 10.17989/ENCSR672EWY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR672EWY float

DNase-seq_ENCSR672EWY
DNase-seq ENCSR672EWY [biosample_summary="Homo sapiens HFFc6"]
 HISTOGRAM FOR DNase-seq_ENCSR672EWY [0.0376, 35.1]
n
28,730,035
mean
1.91
sd
2.47

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 287300350.89% 152557
chr1 2809375 1.13% 14879
chr2 2402602 0.99% 12822
chr3 1952081 0.98% 10363
chr4 1492443 0.78% 8032
chr5 1625201 0.90% 8618
chr6 1768182 1.04% 9408
chr7 1415272 0.89% 7573
chr8 1333211 0.92% 7105
chr9 1221796 0.88% 6487
chr10 1380579 1.03% 7338
chr11 1435987 1.06% 7620
chr12 1437518 1.08% 7601
chr13 755397 0.66% 4014
chr14 861619 0.80% 4545
chr15 997165 0.98% 5274
chr16 895469 0.99% 4709
chr17 1213110 1.46% 6354
chr18 590403 0.73% 3179
chr19 885088 1.51% 4541
chr20 690095 1.07% 3661
chr21 325118 0.70% 1725
chr22 459766 0.90% 2456
chrX 745291 0.48% 4049
chrY 37267 0.07% 204
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 152557 3 960 188.32 180
global segment-length histogram

Files

Filename Size md5
ENCFF462ILY.bed.gz 1.65 MB dba34718435f8ec0f65b3a8915149597
ENCFF462ILY.tabix.bed.gz 1.51 MB 2eed89c98c86e4af99da01cfff8546e3
ENCFF462ILY.tabix.bed.gz.tbi 531.41 KB 83bb6a327bcd60adca9efc8b792a8fb2
genomic_resource.yaml 1.06 KB 028047c9feaa34ed668a11b84d890117
statistics/