Resource

Id DNase-seq/ENCSR671ZRVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR671ZRV [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR671ZRV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000904/
  • biosample_summary: Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-16T03:32:07.405670+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR671ZRV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR671ZRV float

DNase-seq_ENCSR671ZRV
DNase-seq ENCSR671ZRV [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR671ZRV [0.274, 50.7]
n
8,023,019
mean
6.22
sd
6.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80230190.25% 44215
chr1 814034 0.33% 4490
chr2 558993 0.23% 3072
chr3 436600 0.22% 2426
chr4 285963 0.15% 1551
chr5 359385 0.20% 2011
chr6 462708 0.27% 2545
chr7 376721 0.24% 2084
chr8 301885 0.21% 1692
chr9 306873 0.22% 1707
chr10 362988 0.27% 2009
chr11 413837 0.31% 2267
chr12 407765 0.31% 2255
chr13 170463 0.15% 919
chr14 287053 0.27% 1572
chr15 267606 0.26% 1517
chr16 324701 0.36% 1786
chr17 490708 0.59% 2666
chr18 123366 0.15% 689
chr19 514808 0.88% 2750
chr20 219688 0.34% 1241
chr21 94836 0.20% 518
chr22 198852 0.39% 1094
chrX 233468 0.15% 1300
chrY 9718 0.02% 54
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44215 3 660 181.45 180
global segment-length histogram

Files

Filename Size md5
ENCFF358END.bed.gz 488.2 KB fd8b70acab13c4f543d6c614a82dfb20
ENCFF358END.tabix.bed.gz 442.32 KB 71e3b3f5bea30bedc8dddd0ff1090f6c
ENCFF358END.tabix.bed.gz.tbi 225.19 KB a3572bb27f208ace284c3d3335e68197
genomic_resource.yaml 1.92 KB fbfb2c15b768306236e3ff7424753e60
statistics/