Resource
| Id | DNase-seq/ENCSR670BGI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR670BGI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF329ESC|/files/ENCFF329ESC/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR670BGI | float |
DNase-seq_ENCSR670BGI |
DNase-seq ENCSR670BGI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.0837, 16] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11283497 | 0.35% | 58536 |
| chr1 | 1027707 | 0.41% | 5375 |
| chr2 | 834471 | 0.34% | 4406 |
| chr3 | 615593 | 0.31% | 3168 |
| chr4 | 427036 | 0.22% | 2188 |
| chr5 | 553000 | 0.30% | 2894 |
| chr6 | 500907 | 0.29% | 2614 |
| chr7 | 586327 | 0.37% | 3005 |
| chr8 | 575595 | 0.40% | 2889 |
| chr9 | 507587 | 0.37% | 2609 |
| chr10 | 574401 | 0.43% | 2944 |
| chr11 | 711003 | 0.53% | 3676 |
| chr12 | 467289 | 0.35% | 2440 |
| chr13 | 225405 | 0.20% | 1140 |
| chr14 | 359946 | 0.34% | 1914 |
| chr15 | 321749 | 0.32% | 1692 |
| chr16 | 406442 | 0.45% | 2158 |
| chr17 | 608015 | 0.73% | 3189 |
| chr18 | 195126 | 0.24% | 1020 |
| chr19 | 575398 | 0.98% | 2939 |
| chr20 | 375902 | 0.58% | 1989 |
| chr21 | 225147 | 0.48% | 1094 |
| chr22 | 333267 | 0.66% | 1770 |
| chrX | 275666 | 0.18% | 1418 |
| chrY | 518 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58536 | 1 | 1000 | 192.76 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF443KKI.bed.gz | 632.07 KB | a2cee2b79b56856cf3afb614e84cf090 |
| ENCFF443KKI.tabix.bed.gz | 579.05 KB | d944a15720e9f2a4d69efdf169b4428d |
| ENCFF443KKI.tabix.bed.gz.tbi | 229.7 KB | 6e1c83e36a50890d46ddea8b3efae6e0 |
| genomic_resource.yaml | 2.14 KB | bdc70a0fa5a20c47bb9804aaa91ceaa1 |
| statistics/ |