Resource

Id DNase-seq/ENCSR662RIZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR662RIZ [biosample_summary="Homo sapiens H9"]
Description
Labels
  • accession: ENCSR662RIZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9
  • date_created: 2020-12-12T22:17:54.854715+00:00
  • date_released: 2021-02-27
  • doi: 10.17989/ENCSR662RIZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR662RIZ float

DNase-seq_ENCSR662RIZ

DNase-seq ENCSR662RIZ [biosample_summary="Homo sapiens H9"]
HISTOGRAM FOR DNase-seq_ENCSR662RIZ [0.0611, 28.9]
n
23,043,959
mean
2.28
sd
2.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 230439590.72% 126918
chr1 2168493 0.87% 11814
chr2 1688844 0.70% 9455
chr3 1312139 0.66% 7369
chr4 1034605 0.54% 5842
chr5 1202017 0.66% 6692
chr6 1270566 0.74% 7049
chr7 1159892 0.73% 6481
chr8 996420 0.69% 5556
chr9 987292 0.71% 5474
chr10 1085843 0.81% 6009
chr11 1238756 0.92% 6787
chr12 1136667 0.85% 6169
chr13 545277 0.48% 3073
chr14 745464 0.70% 4039
chr15 746922 0.73% 4073
chr16 868889 0.96% 4721
chr17 1118438 1.34% 5923
chr18 485915 0.60% 2771
chr19 1126068 1.92% 5762
chr20 658655 1.02% 3642
chr21 245752 0.53% 1381
chr22 469355 0.92% 2586
chrX 751250 0.48% 4247
chrY 440 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126918 1 860 181.57 176
global segment-length histogram

Files

Filename Size md5
ENCFF190JAO.bed.gz 1.35 MB c3a9869ff51f2fab9044a164c9b18c47
ENCFF190JAO.tabix.bed.gz 1.24 MB fc4a745c0605516e0a754de1ca56b88b
ENCFF190JAO.tabix.bed.gz.tbi 499.78 KB 6671ab736597dc14781f934523a61dd0
genomic_resource.yaml 1.06 KB 077f0a1b67159cada2feea5bd38871f7
statistics/