Resource

Id DNase-seq/ENCSR662IRScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR662IRS [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR662IRS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:51.542964+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR662IRS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR662IRS float

DNase-seq_ENCSR662IRS
DNase-seq ENCSR662IRS [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR662IRS [0.0512, 67.9]
n
12,893,610
mean
4.98
sd
6.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 128936100.40% 67166
chr1 1300042 0.52% 6754
chr2 927658 0.38% 4834
chr3 665584 0.34% 3461
chr4 439524 0.23% 2292
chr5 554923 0.31% 2912
chr6 725718 0.42% 3777
chr7 612050 0.38% 3207
chr8 479652 0.33% 2544
chr9 508123 0.37% 2672
chr10 570831 0.43% 2985
chr11 695953 0.52% 3644
chr12 644676 0.48% 3333
chr13 266402 0.23% 1387
chr14 459663 0.43% 2398
chr15 413534 0.41% 2189
chr16 537346 0.59% 2785
chr17 779956 0.94% 4026
chr18 207676 0.26% 1074
chr19 830060 1.42% 4214
chr20 371831 0.58% 1972
chr21 174236 0.37% 911
chr22 329477 0.65% 1730
chrX 398291 0.26% 2061
chrY 404 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 67166 4 880 191.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF253UCX.bed.gz 759.1 KB 352b3390b22c721720de4076f9f70b4b
ENCFF253UCX.tabix.bed.gz 695.44 KB 7a29ad2dec29d7a1ecd44dce1c898d4a
ENCFF253UCX.tabix.bed.gz.tbi 262.59 KB 67e70b36f049f21a0a7632f8bd55e5ba
genomic_resource.yaml 1.27 KB 9e9f5d736e3f5185f171fc542b7453e2
statistics/