Resource
| Id | DNase-seq/ENCSR661AMM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR661AMM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (83 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF195KCN|/files/ENCFF195KCN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR661AMM | float |
DNase-seq_ENCSR661AMM |
DNase-seq ENCSR661AMM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (83 years)"]
|
 |
[0.0445, 15.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25514863 | 0.79% | 129725 |
| chr1 | 2309450 | 0.93% | 11738 |
| chr2 | 2458055 | 1.01% | 12368 |
| chr3 | 1082663 | 0.55% | 5641 |
| chr4 | 674582 | 0.35% | 3392 |
| chr5 | 1215383 | 0.67% | 6141 |
| chr6 | 993112 | 0.58% | 5153 |
| chr7 | 1436720 | 0.90% | 7324 |
| chr8 | 1168054 | 0.80% | 5915 |
| chr9 | 1161301 | 0.84% | 5946 |
| chr10 | 1514660 | 1.13% | 7651 |
| chr11 | 1386682 | 1.03% | 6964 |
| chr12 | 1020286 | 0.77% | 5264 |
| chr13 | 479714 | 0.42% | 2460 |
| chr14 | 869903 | 0.81% | 4365 |
| chr15 | 988113 | 0.97% | 5032 |
| chr16 | 1082655 | 1.20% | 5514 |
| chr17 | 1393989 | 1.67% | 7182 |
| chr18 | 502254 | 0.62% | 2521 |
| chr19 | 942444 | 1.61% | 4774 |
| chr20 | 832437 | 1.29% | 4233 |
| chr21 | 444982 | 0.95% | 2232 |
| chr22 | 978482 | 1.93% | 4863 |
| chrX | 577051 | 0.37% | 3035 |
| chrY | 1891 | <0.01% | 17 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 129725 | 1 | 1060 | 196.68 | 183 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF981IQP.bed.gz | 1.23 MB | 9257317ddfc26d160c7852de3982cd58 |
| ENCFF981IQP.tabix.bed.gz | 1.15 MB | f6d99c77f0fd973e4acb135549c86daf |
| ENCFF981IQP.tabix.bed.gz.tbi | 236.3 KB | 8299f4c56945ef3c71d1ed4e02565cfa |
| genomic_resource.yaml | 2.09 KB | 525147c1f346236d98d5e34031206b42 |
| statistics/ |