Resource

Id DNase-seq/ENCSR660FSUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR660FSU [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR660FSU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-18T05:21:36.645868+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR660FSU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR660FSU float

DNase-seq_ENCSR660FSU
DNase-seq ENCSR660FSU [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR660FSU [0.216, 62.7]
n
8,151,880
mean
6.93
sd
7.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81518800.25% 42889
chr1 837373 0.34% 4393
chr2 570904 0.24% 2995
chr3 449802 0.23% 2346
chr4 274863 0.14% 1403
chr5 351368 0.19% 1880
chr6 477777 0.28% 2497
chr7 367083 0.23% 1968
chr8 297246 0.20% 1585
chr9 322339 0.23% 1713
chr10 363408 0.27% 1954
chr11 409190 0.30% 2148
chr12 426397 0.32% 2223
chr13 161512 0.14% 853
chr14 284958 0.27% 1481
chr15 263831 0.26% 1420
chr16 345955 0.38% 1798
chr17 491264 0.59% 2593
chr18 125563 0.16% 669
chr19 555897 0.95% 2842
chr20 234020 0.36% 1268
chr21 96684 0.21% 510
chr22 204687 0.40% 1089
chrX 239759 0.15% 1261
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42889 10 700 190.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF341YNA.bed.gz 478.79 KB fb718e6dad2f62c27342a4cbdced4212
ENCFF341YNA.tabix.bed.gz 433.55 KB f5d4e7ca5e109c096dea4e87d98a82dd
ENCFF341YNA.tabix.bed.gz.tbi 213.92 KB b8e5471ea5c573b6a4945c5f34d1916f
genomic_resource.yaml 2.32 KB 73d90a77711bc7a1873b73df601615e4
statistics/