Resource

Id DNase-seq/ENCSR658UBEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR658UBE [biosample_summary="Homo sapiens left lung tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR658UBE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue female child (16 years)
  • date_created: 2019-11-01T17:50:57.963971+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR658UBE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR658UBE float

DNase-seq_ENCSR658UBE

DNase-seq ENCSR658UBE [biosample_summary="Homo sapiens left lung tissue female child (16 years)"]
HISTOGRAM FOR DNase-seq_ENCSR658UBE [0.0533, 33.6]
n
20,257,616
mean
1.9
sd
2.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 202576160.63% 106009
chr1 1828625 0.73% 9613
chr2 1672469 0.69% 8768
chr3 1081574 0.55% 5760
chr4 725825 0.38% 3805
chr5 921024 0.51% 4878
chr6 876235 0.51% 4718
chr7 1066637 0.67% 5574
chr8 847404 0.58% 4415
chr9 961930 0.70% 4874
chr10 1064813 0.80% 5578
chr11 1208066 0.89% 6281
chr12 806003 0.60% 4257
chr13 353149 0.31% 1869
chr14 701881 0.66% 3730
chr15 708461 0.69% 3750
chr16 827328 0.92% 4322
chr17 1162067 1.40% 6107
chr18 373436 0.46% 1951
chr19 960524 1.64% 4857
chr20 622012 0.97% 3231
chr21 370542 0.79% 1883
chr22 688908 1.36% 3516
chrX 428242 0.27% 2268
chrY 461 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106009 2 940 191.09 180
global segment-length histogram

Files

Filename Size md5
ENCFF748HFC.bed.gz 1.1 MB 35be1cc7252bb9ea7a014ee49baa32f4
ENCFF748HFC.tabix.bed.gz 1.02 MB d447e0c017a7955ce2b0e23ace5ccb63
ENCFF748HFC.tabix.bed.gz.tbi 309.35 KB 5cf2852f5cd1b8f8f0eb10b431168871
genomic_resource.yaml 1.22 KB 2e03370f1830f13bd13f5f7240c2a341
statistics/