Resource

Id DNase-seq/ENCSR658EHMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR658EHM [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
Description
Labels
  • accession: ENCSR658EHM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011019/
  • biosample_summary: Homo sapiens mesothelial cell of epicardium
  • date_created: 2021-04-29T19:28:13.128771+00:00
  • date_released: 2021-09-10
  • doi: 10.17989/ENCSR658EHM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR658EHM float

DNase-seq_ENCSR658EHM

DNase-seq ENCSR658EHM [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
HISTOGRAM FOR DNase-seq_ENCSR658EHM [0.0558, 17.8]
n
18,174,473
mean
1.34
sd
1.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 181744730.56% 86673
chr1 1739675 0.70% 8099
chr2 1553381 0.64% 7449
chr3 980700 0.49% 4630
chr4 623894 0.33% 2863
chr5 931190 0.51% 4411
chr6 936217 0.55% 4383
chr7 891861 0.56% 4229
chr8 771622 0.53% 3716
chr9 823037 0.59% 3962
chr10 1010808 0.76% 4856
chr11 1042627 0.77% 5016
chr12 700052 0.53% 3301
chr13 329168 0.29% 1579
chr14 636637 0.59% 3022
chr15 694973 0.68% 3400
chr16 677225 0.75% 3336
chr17 931593 1.12% 4457
chr18 368586 0.46% 1806
chr19 812033 1.39% 3794
chr20 531997 0.83% 2656
chr21 279543 0.60% 1320
chr22 483263 0.95% 2355
chrX 423801 0.27% 2028
chrY 590 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86673 1 1204 209.69 200
global segment-length histogram

Files

Filename Size md5
ENCFF291PBQ.bed.gz 900.27 KB 6852f4239db2fa643ae0920085bc091b
ENCFF291PBQ.tabix.bed.gz 843.44 KB a6013432ef699e463fdd66c135ac1e2b
ENCFF291PBQ.tabix.bed.gz.tbi 265.05 KB 7d51c6f9dc4ce1a34487cd3b8f87f8c0
genomic_resource.yaml 2.01 KB 298701da3be311e62b0d5cae068dbd78
statistics/