Resource

Id DNase-seq/ENCSR655LUXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR655LUX [biosample_summary="Homo sapiens T-helper 2 cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR655LUX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000546/
  • biosample_summary: Homo sapiens T-helper 2 cell male adult (38 years)
  • date_created: 2022-03-15T00:46:41.251564+00:00
  • date_released: 2022-05-25
  • doi: 10.17989/ENCSR655LUX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR655LUX float

DNase-seq_ENCSR655LUX

DNase-seq ENCSR655LUX [biosample_summary="Homo sapiens T-helper 2 cell male adult (38 years)"]
HISTOGRAM FOR DNase-seq_ENCSR655LUX [0.0996, 86.3]
n
11,471,163
mean
6.31
sd
9.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 114711630.36% 55385
chr1 1143336 0.46% 5539
chr2 820190 0.34% 3976
chr3 631446 0.32% 3060
chr4 393795 0.21% 1900
chr5 526271 0.29% 2544
chr6 719234 0.42% 3422
chr7 522409 0.33% 2541
chr8 418310 0.29% 2050
chr9 450358 0.33% 2180
chr10 533492 0.40% 2558
chr11 581484 0.43% 2844
chr12 595605 0.45% 2876
chr13 245955 0.22% 1174
chr14 403400 0.38% 1944
chr15 361335 0.35% 1786
chr16 468286 0.52% 2246
chr17 688982 0.83% 3316
chr18 181381 0.23% 880
chr19 713875 1.22% 3339
chr20 317174 0.49% 1547
chr21 130475 0.28% 628
chr22 271238 0.53% 1331
chrX 353132 0.23% 1704
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55385 2 1060 207.12 200
global segment-length histogram

Files

Filename Size md5
ENCFF522GCK.bed.gz 614.5 KB 574d7cf224221c55e97fb2a5fd6976cd
ENCFF522GCK.tabix.bed.gz 566.26 KB 0bb8570d7d514225a159660f88a957f0
ENCFF522GCK.tabix.bed.gz.tbi 244.01 KB 87bf31b9272d7c9c94708b19e08ad3bb
genomic_resource.yaml 1.21 KB b94947edc3a89619bde31fc01734409c
statistics/