Resource

Id DNase-seq/ENCSR654LSTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR654LST [biosample_summary="Homo sapiens immature natural killer cell"]
Description
Labels
  • accession: ENCSR654LST
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000823/
  • biosample_summary: Homo sapiens immature natural killer cell
  • date_created: 2022-02-07T22:20:21.686816+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR654LST
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR654LST float

DNase-seq_ENCSR654LST

DNase-seq ENCSR654LST [biosample_summary="Homo sapiens immature natural killer cell"]
HISTOGRAM FOR DNase-seq_ENCSR654LST [0.0838, 88.5]
n
16,273,343
mean
5.16
sd
9.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162733430.51% 79785
chr1 1607507 0.65% 7907
chr2 1216320 0.50% 6007
chr3 909955 0.46% 4462
chr4 594076 0.31% 2926
chr5 775291 0.43% 3810
chr6 991430 0.58% 4837
chr7 789158 0.50% 3881
chr8 622646 0.43% 3066
chr9 672278 0.49% 3316
chr10 768506 0.57% 3739
chr11 816889 0.60% 4034
chr12 799036 0.60% 3909
chr13 365965 0.32% 1791
chr14 553686 0.52% 2690
chr15 531670 0.52% 2669
chr16 624871 0.69% 3029
chr17 901670 1.08% 4363
chr18 310561 0.39% 1513
chr19 884037 1.51% 4230
chr20 456601 0.71% 2270
chr21 196007 0.42% 958
chr22 371122 0.73% 1829
chrX 513641 0.33% 2546
chrY 420 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 79785 9 940 203.96 200
global segment-length histogram

Files

Filename Size md5
ENCFF172RTA.bed.gz 898.22 KB 776166f01cc5668dc042c54ce4acaec2
ENCFF172RTA.tabix.bed.gz 825.65 KB 22c434de8d4367c0f88b60d4602eeb7e
ENCFF172RTA.tabix.bed.gz.tbi 323.72 KB 07363f48823dff006c0d9148db4277ac
genomic_resource.yaml 1.14 KB 5aadb763a278cbbad60f9ae6065200fe
statistics/