Resource
| Id | DNase-seq/ENCSR649PJN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR649PJN [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_warning: Alignment file {ENCFF100RAH|/files/ENCFF100RAH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27335468 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR649PJN | float |
DNase-seq_ENCSR649PJN |
DNase-seq ENCSR649PJN [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"]
|
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[0.257, 20.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9414047 | 0.29% | 51931 |
| chr1 | 843351 | 0.34% | 4631 |
| chr2 | 775243 | 0.32% | 4307 |
| chr3 | 616882 | 0.31% | 3443 |
| chr4 | 498833 | 0.26% | 2779 |
| chr5 | 538463 | 0.30% | 2982 |
| chr6 | 582789 | 0.34% | 3190 |
| chr7 | 466670 | 0.29% | 2610 |
| chr8 | 458925 | 0.32% | 2530 |
| chr9 | 398349 | 0.29% | 2174 |
| chr10 | 438320 | 0.33% | 2437 |
| chr11 | 491531 | 0.36% | 2679 |
| chr12 | 483886 | 0.36% | 2662 |
| chr13 | 265955 | 0.23% | 1486 |
| chr14 | 312025 | 0.29% | 1702 |
| chr15 | 302598 | 0.30% | 1667 |
| chr16 | 276769 | 0.31% | 1552 |
| chr17 | 362194 | 0.44% | 1974 |
| chr18 | 203895 | 0.25% | 1143 |
| chr19 | 365995 | 0.62% | 1874 |
| chr20 | 234452 | 0.36% | 1298 |
| chr21 | 105191 | 0.23% | 597 |
| chr22 | 145167 | 0.29% | 822 |
| chrX | 239428 | 0.15% | 1351 |
| chrY | 7136 | 0.01% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 51931 | 1 | 920 | 181.28 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF353AYR.bed.gz | 549.5 KB | cfc287e7529c60028a15abf76fcdc2a9 |
| ENCFF353AYR.tabix.bed.gz | 488.84 KB | 01b22655eea073f32f3d8528e10eed05 |
| ENCFF353AYR.tabix.bed.gz.tbi | 299.07 KB | 0464797efc0894cd2f4ef75033c2163e |
| genomic_resource.yaml | 1.83 KB | d679d5925ca19642335b2e5ae17deefe |
| statistics/ |
