Resource

Id DNase-seq/ENCSR649PJNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR649PJN [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"]
Description
Labels
  • accession: ENCSR649PJN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001499/
  • biosample_summary: Homo sapiens muscle of arm tissue male embryo (97 days)
  • date_created: 2015-09-16T21:42:39.179696+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR649PJN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR649PJN float

DNase-seq_ENCSR649PJN

DNase-seq ENCSR649PJN [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"]
HISTOGRAM FOR DNase-seq_ENCSR649PJN [0.257, 20.8]
n
9,414,047
mean
2.87
sd
2.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 94140470.29% 51931
chr1 843351 0.34% 4631
chr2 775243 0.32% 4307
chr3 616882 0.31% 3443
chr4 498833 0.26% 2779
chr5 538463 0.30% 2982
chr6 582789 0.34% 3190
chr7 466670 0.29% 2610
chr8 458925 0.32% 2530
chr9 398349 0.29% 2174
chr10 438320 0.33% 2437
chr11 491531 0.36% 2679
chr12 483886 0.36% 2662
chr13 265955 0.23% 1486
chr14 312025 0.29% 1702
chr15 302598 0.30% 1667
chr16 276769 0.31% 1552
chr17 362194 0.44% 1974
chr18 203895 0.25% 1143
chr19 365995 0.62% 1874
chr20 234452 0.36% 1298
chr21 105191 0.23% 597
chr22 145167 0.29% 822
chrX 239428 0.15% 1351
chrY 7136 0.01% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51931 1 920 181.28 180
global segment-length histogram

Files

Filename Size md5
ENCFF353AYR.bed.gz 549.5 KB cfc287e7529c60028a15abf76fcdc2a9
ENCFF353AYR.tabix.bed.gz 488.84 KB 01b22655eea073f32f3d8528e10eed05
ENCFF353AYR.tabix.bed.gz.tbi 299.07 KB 0464797efc0894cd2f4ef75033c2163e
genomic_resource.yaml 1.83 KB d679d5925ca19642335b2e5ae17deefe
statistics/