Resource

Id DNase-seq/ENCSR648RAXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR648RAX [biosample_summary="Homo sapiens placenta tissue female embryo (85 days)"]
Description
Labels
  • accession: ENCSR648RAX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo (85 days)
  • date_created: 2015-09-16T21:42:42.735530+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR648RAX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (85 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR648RAX float

DNase-seq_ENCSR648RAX
DNase-seq ENCSR648RAX [biosample_summary="Homo sapiens placenta tissue female embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR648RAX [3, 3.41e+03]
n
19,637,746
mean
64.6
sd
61.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 196377460.61% 130726
chr1 1883215 0.76% 12536
chr2 1592312 0.66% 10591
chr3 1345018 0.68% 8954
chr4 1010437 0.53% 6724
chr5 1121622 0.62% 7464
chr6 1253556 0.73% 8347
chr7 1070308 0.67% 7123
chr8 871150 0.60% 5796
chr9 830509 0.60% 5531
chr10 898494 0.67% 5986
chr11 952282 0.70% 6341
chr12 970409 0.73% 6462
chr13 480150 0.42% 3195
chr14 594266 0.56% 3955
chr15 614671 0.60% 4092
chr16 608113 0.67% 4048
chr17 759102 0.91% 5055
chr18 432419 0.54% 2879
chr19 686133 1.17% 4569
chr20 501600 0.78% 3342
chr21 229435 0.49% 1529
chr22 325650 0.64% 2170
chrX 604795 0.39% 4023
chrY 2100 <0.01% 14
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130726 14 450 150.22 150
global segment-length histogram

Files

Filename Size md5
ENCFF128BFZ.bed.gz 1.24 MB af59f1c0dfacd1f1542a8171fcdd3f27
ENCFF128BFZ.tabix.bed.gz 1.06 MB ce88125949932f96d50d42ee3441ac11
ENCFF128BFZ.tabix.bed.gz.tbi 529.87 KB 93b036ecb081921850f3bfeee4b09111
genomic_resource.yaml 1.39 KB 58860adf916a59ec18728202567038ba
statistics/