Resource

Id DNase-seq/ENCSR646BJTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR646BJT [biosample_summary="Homo sapiens B cell female adult (43 years)"]
Description
Labels
  • accession: ENCSR646BJT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000236/
  • biosample_summary: Homo sapiens B cell female adult (43 years)
  • date_created: 2015-09-16T21:42:01.873001+00:00
  • date_released: 2013-07-31
  • doi:
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (43 years)
  • status: released
  • submitter_comment: This experiment was originally revoked due to concerns of biosample mislabeling, but has been unrevoked on Sept 8, 2025 after a lab review determined the biosample was not mislabeled.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR646BJT float

DNase-seq_ENCSR646BJT
DNase-seq ENCSR646BJT [biosample_summary="Homo sapiens B cell female adult (43 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR646BJT [4, 1.67e+03]
n
11,575,641
mean
43.6
sd
37.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 115756410.36% 76951
chr1 1072650 0.43% 7134
chr1_KI270709v1_random 150 0.22% 1
chr1_KI270713v1_random 450 1.10% 3
chr2 935708 0.39% 6218
chr3 762216 0.38% 5065
chr4 621835 0.33% 4134
chr4_GL000008v2_random 1500 0.72% 10
chr5 633065 0.35% 4210
chr6 729226 0.43% 4852
chr7 594020 0.37% 3945
chr8 518020 0.36% 3443
chr9 484289 0.35% 3210
chr10 537237 0.40% 3573
chr11 597147 0.44% 3973
chr11_KI270721v1_random 150 0.15% 1
chr12 581935 0.44% 3868
chr13 303239 0.27% 2010
chr14 372990 0.35% 2478
chr14_GL000225v1_random 2250 1.07% 15
chr14_KI270724v1_random 150 0.38% 1
chr15 366582 0.36% 2438
chr16 368773 0.41% 2455
chr16_KI270728v1_random 150 0.01% 1
chr17 459140 0.55% 3052
chr17_GL000205v2_random 1050 0.57% 7
chr17_KI270729v1_random 1350 0.48% 9
chr17_KI270730v1_random 150 0.13% 1
chr18 267600 0.33% 1778
chr19 407110 0.69% 2708
chr20 292238 0.45% 1945
chr21 127043 0.27% 842
chr22 190059 0.37% 1267
chr22_KI270733v1_random 600 0.33% 4
chr22_KI270738v1_random 150 0.15% 1
chrUn_GL000195v1 1200 0.66% 8
chrUn_GL000216v2 1050 0.59% 7
chrUn_GL000219v1 750 0.42% 5
chrUn_GL000220v1 300 0.19% 2
chrUn_GL000224v1 450 0.25% 3
chrUn_KI270333v1 750 27.79% 5
chrUn_KI270336v1 150 14.62% 1
chrUn_KI270337v1 300 26.76% 2
chrUn_KI270438v1 2850 2.53% 19
chrUn_KI270442v1 600 0.15% 4
chrUn_KI270466v1 150 12.17% 1
chrUn_KI270467v1 1050 26.79% 7
chrUn_KI270519v1 150 0.11% 1
chrUn_KI270538v1 150 0.16% 1
chrUn_KI270744v1 1650 0.98% 11
chrUn_KI270751v1 150 0.10% 1
chrX 332819 0.21% 2215
chrY 900 <0.01% 6
3314 contigs with no values (123734429 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76951 26 429 150.43 150
global segment-length histogram

Files

Filename Size md5
ENCFF823JTT.bed.gz 749.59 KB e7bc3c7e83d3fb1b6cf6e2fbbe19459a
ENCFF823JTT.tabix.bed.gz 641.29 KB 1d3cf19dfb0295285319227083874ea0
ENCFF823JTT.tabix.bed.gz.tbi 399.24 KB 425cc5712d4f1cd1aa78b5984100cb27
genomic_resource.yaml 1.36 KB 269af012e5e680f4bb171e6552419daa
statistics/