Resource

Id DNase-seq/ENCSR643ZGRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR643ZGR [biosample_summary="Homo sapiens inflammatory macrophage male adult (40 years) treated with lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR643ZGR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000863/
  • biosample_summary: Homo sapiens inflammatory macrophage male adult (40 years) treated with lipopolysaccharide for 1 hour
  • date_created: 2018-11-29T17:36:42.152702+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR643ZGR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years) treated with lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR803BLT.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR643ZGR float

DNase-seq_ENCSR643ZGR
DNase-seq ENCSR643ZGR [biosample_summary="Homo sapiens inflammatory macrophage male adult (40 years) treated with lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR643ZGR [0.0897, 30.7]
n
28,981,745
mean
3
sd
3.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 289817450.90% 158757
chr1 2798099 1.12% 15300
chr2 2344142 0.97% 12891
chr3 1931516 0.97% 10585
chr4 1235297 0.65% 6872
chr5 1564803 0.86% 8610
chr6 1808536 1.06% 9882
chr7 1433813 0.90% 7888
chr8 1350919 0.93% 7405
chr9 1206641 0.87% 6660
chr10 1437969 1.07% 7888
chr11 1423111 1.05% 7746
chr12 1497812 1.12% 8202
chr13 682819 0.60% 3786
chr14 926114 0.87% 5030
chr15 976909 0.96% 5372
chr16 957091 1.06% 5255
chr17 1323782 1.59% 7176
chr18 569108 0.71% 3165
chr19 1054516 1.80% 5581
chr20 793442 1.23% 4331
chr21 356123 0.76% 1945
chr22 538803 1.06% 2943
chrX 741808 0.48% 4085
chrY 28572 0.05% 159
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 158757 3 880 182.55 180
global segment-length histogram

Files

Filename Size md5
ENCFF162LTR.bed.gz 1.71 MB dffc5293ea6ce8b06bcd6ea57bd585d9
ENCFF162LTR.tabix.bed.gz 1.54 MB b264aeec3f288889943a94502603ac44
ENCFF162LTR.tabix.bed.gz.tbi 508.26 KB ba3e054a2956dc24173a4c35e22da1c5
genomic_resource.yaml 1.57 KB 20632c4aeed202e883aa49cc65852a4f
statistics/