type: position_score
table:
  filename: ENCFF412EJZ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR643GHI
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR643GHI [TISSUE: Homo sapiens CD4-positive, alpha-beta T
    cell female adult (33 years)]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female adult (33 years)


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN401SUC|/analyses/ENCAN401SUC/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_warning**: Alignment file {ENCFF787DAE|/files/ENCFF787DAE/} processed
    by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} )
    for GRCh38 assembly has 32491105 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})


    **audit\_warning**: Alignment file {ENCFF263RQE|/files/ENCFF263RQE/} processed
    by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} )
    for GRCh38 assembly has 32252901 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR643GHI
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: female adult (33 years)
    biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33
      years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_CL_0000624/
    perturbed: false
    doi: 10.17989/ENCSR643GHI
    date_created: '2015-09-16T21:42:03.679940+00:00'
    date_released: '2013-07-31'
    submitter_comment: ''