Resource

Id DNase-seq/ENCSR642DZFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR642DZF [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR642DZF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-04-12T18:59:13.954707+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR642DZF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR642DZF float

DNase-seq_ENCSR642DZF
DNase-seq ENCSR642DZF [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR642DZF [0.229, 161]
n
8,013,579
mean
11.1
sd
17.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80135790.25% 44120
chr1 806696 0.32% 4419
chr2 567242 0.23% 3145
chr3 434557 0.22% 2408
chr4 273599 0.14% 1507
chr5 362677 0.20% 1999
chr6 469661 0.27% 2585
chr7 376377 0.24% 2078
chr8 292964 0.20% 1617
chr9 310846 0.22% 1715
chr10 354581 0.27% 1967
chr11 406198 0.30% 2243
chr12 410495 0.31% 2271
chr13 161304 0.14% 883
chr14 281596 0.26% 1564
chr15 256648 0.25% 1448
chr16 327904 0.36% 1794
chr17 503722 0.61% 2751
chr18 124972 0.16% 706
chr19 532039 0.91% 2835
chr20 224248 0.35% 1254
chr21 100930 0.22% 542
chr22 189812 0.37% 1051
chrX 244511 0.16% 1338
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44120 8 720 181.63 180
global segment-length histogram

Files

Filename Size md5
ENCFF060XOT.bed.gz 495.26 KB cf4e114da91ec41c46d31f0b76be58a9
ENCFF060XOT.tabix.bed.gz 447.86 KB b6cb82f7d9a342f7a54e36b555619685
ENCFF060XOT.tabix.bed.gz.tbi 218.4 KB 31e112e8c96744bbe874fd05f1d08c0a
genomic_resource.yaml 2.23 KB ab64ec0ffca300e823200564eb2d7339
statistics/