Resource

Id DNase-seq/ENCSR639XWFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR639XWF [biosample_summary="Homo sapiens left lung tissue male embryo (96 days)"]
Description
Labels
  • accession: ENCSR639XWF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue male embryo (96 days)
  • date_created: 2015-09-16T21:42:54.333658+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR639XWF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR639XWF float

DNase-seq_ENCSR639XWF
DNase-seq ENCSR639XWF [biosample_summary="Homo sapiens left lung tissue male embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR639XWF [0.207, 22.3]
n
12,663,225
mean
2.55
sd
2.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126632250.39% 61724
chr1 1149602 0.46% 5554
chr2 1034399 0.43% 5020
chr3 861649 0.43% 4204
chr4 658592 0.35% 3219
chr5 726719 0.40% 3513
chr6 766717 0.45% 3729
chr7 653979 0.41% 3220
chr8 591371 0.41% 2924
chr9 537747 0.39% 2594
chr10 623827 0.47% 3071
chr11 631000 0.47% 3050
chr12 628166 0.47% 3069
chr13 362007 0.32% 1775
chr14 399895 0.37% 1936
chr15 408549 0.40% 2036
chr16 386890 0.43% 1887
chr17 508863 0.61% 2505
chr18 292702 0.36% 1465
chr19 475991 0.81% 2202
chr20 308796 0.48% 1531
chr21 139646 0.30% 669
chr22 203601 0.40% 1015
chrX 298233 0.19% 1467
chrY 14284 0.02% 69
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61724 1 1046 205.16 200
global segment-length histogram

Files

Filename Size md5
ENCFF342JXG.bed.gz 652.0 KB 9e6706f9b378e93db25607fea5de908f
ENCFF342JXG.tabix.bed.gz 588.17 KB aebacd766ae0b99dffdcda7a1edf9751
ENCFF342JXG.tabix.bed.gz.tbi 328.43 KB 90ceba2aff0194b323c8262a665462a4
genomic_resource.yaml 1.82 KB 5bac5344f23e60f18488af50066f9b44
statistics/