Resource
| Id | DNase-seq/ENCSR637ZLM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR637ZLM [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF561NEE|/files/ENCFF561NEE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR637ZLM | float |
DNase-seq_ENCSR637ZLM |
DNase-seq ENCSR637ZLM [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
|
 |
[0.0805, 22.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13669715 | 0.42% | 75025 |
| chr1 | 1276381 | 0.51% | 6970 |
| chr2 | 1082969 | 0.45% | 6014 |
| chr3 | 725440 | 0.37% | 3945 |
| chr4 | 528375 | 0.28% | 2861 |
| chr5 | 664046 | 0.37% | 3667 |
| chr6 | 662630 | 0.39% | 3628 |
| chr7 | 658956 | 0.41% | 3619 |
| chr8 | 584862 | 0.40% | 3226 |
| chr9 | 595656 | 0.43% | 3261 |
| chr10 | 747422 | 0.56% | 4149 |
| chr11 | 792565 | 0.59% | 4356 |
| chr12 | 629089 | 0.47% | 3401 |
| chr13 | 253665 | 0.22% | 1405 |
| chr14 | 469287 | 0.44% | 2587 |
| chr15 | 459579 | 0.45% | 2526 |
| chr16 | 522011 | 0.58% | 2902 |
| chr17 | 724603 | 0.87% | 3978 |
| chr18 | 263607 | 0.33% | 1451 |
| chr19 | 741511 | 1.26% | 3892 |
| chr20 | 373476 | 0.58% | 2090 |
| chr21 | 166318 | 0.36% | 934 |
| chr22 | 436780 | 0.86% | 2474 |
| chrX | 309341 | 0.20% | 1680 |
| chrY | 1146 | <0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75025 | 1 | 841 | 182.2 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF922ZXC.bed.gz | 823.75 KB | b37f274f32feeb87f8bbf0f959a147d0 |
| ENCFF922ZXC.tabix.bed.gz | 748.79 KB | 1e303cea26229bbe5835d71a925a0329 |
| ENCFF922ZXC.tabix.bed.gz.tbi | 294.43 KB | b9835c9aa4373a80d8fce590e32e0d7f |
| genomic_resource.yaml | 2.12 KB | 2bafba5405fb100b858ba9c9b95bfc53 |
| statistics/ |