Resource

Id DNase-seq/ENCSR635URJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR635URJ [biosample_summary="Homo sapiens T-cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR635URJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (25 years)
  • date_created: 2020-04-12T18:59:13.730431+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR635URJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR635URJ float

DNase-seq_ENCSR635URJ
DNase-seq ENCSR635URJ [biosample_summary="Homo sapiens T-cell female adult (25 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR635URJ [0.313, 81.9]
n
7,471,226
mean
8.3
sd
9.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74712260.23% 40107
chr1 770102 0.31% 4127
chr2 504458 0.21% 2699
chr3 399825 0.20% 2133
chr4 255338 0.13% 1355
chr5 323509 0.18% 1741
chr6 431787 0.25% 2299
chr7 343541 0.22% 1866
chr8 261755 0.18% 1448
chr9 298431 0.22% 1594
chr10 324008 0.24% 1750
chr11 393158 0.29% 2100
chr12 381543 0.29% 2046
chr13 148112 0.13% 770
chr14 259797 0.24% 1389
chr15 239145 0.23% 1297
chr16 313362 0.35% 1689
chr17 467326 0.56% 2530
chr18 110233 0.14% 615
chr19 533767 0.91% 2792
chr20 209704 0.33% 1158
chr21 90096 0.19% 486
chr22 186162 0.37% 1014
chrX 226067 0.14% 1209
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40107 1 700 186.28 180
global segment-length histogram

Files

Filename Size md5
ENCFF495BUD.bed.gz 444.86 KB 8fbdd5de48892b40d07055e447ce4733
ENCFF495BUD.tabix.bed.gz 403.46 KB 764cb963f93ed1bbe8b5d8ec3bd0cf23
ENCFF495BUD.tabix.bed.gz.tbi 199.39 KB f4c5289b9eb892a34c0284d2dbcaf918
genomic_resource.yaml 1.8 KB babe6a6a65db58015c30727841110528
statistics/