Resource

Id DNase-seq/ENCSR635QIZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR635QIZ [biosample_summary="Homo sapiens activated T-helper 1 cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR635QIZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000633/
  • biosample_summary: Homo sapiens activated T-helper 1 cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:07.801071+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR635QIZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously CL:0000545 (T-helper 1 cell). It has been updated to NTR:0000633 (activated T-helper 1 cell) on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR635QIZ float

DNase-seq_ENCSR635QIZ
DNase-seq ENCSR635QIZ [biosample_summary="Homo sapiens activated T-helper 1 cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR635QIZ [0.181, 55]
n
7,481,317
mean
7.12
sd
7.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74813170.23% 38838
chr1 762991 0.31% 3956
chr2 503795 0.21% 2592
chr3 402876 0.20% 2070
chr4 246773 0.13% 1265
chr5 319778 0.18% 1669
chr6 425890 0.25% 2227
chr7 340651 0.21% 1772
chr8 270943 0.19% 1425
chr9 304797 0.22% 1585
chr10 321308 0.24% 1695
chr11 386144 0.29% 2018
chr12 378658 0.28% 1958
chr13 147268 0.13% 748
chr14 267429 0.25% 1371
chr15 247895 0.24% 1312
chr16 321037 0.36% 1669
chr17 480084 0.58% 2494
chr18 111091 0.14% 586
chr19 536337 0.91% 2719
chr20 212894 0.33% 1129
chr21 86036 0.18% 452
chr22 186710 0.37% 991
chrX 219932 0.14% 1135
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38838 1 880 192.63 180
global segment-length histogram

Files

Filename Size md5
ENCFF553LLN.bed.gz 432.48 KB 842edbb7d602889424577bfc47a84d1a
ENCFF553LLN.tabix.bed.gz 392.25 KB 70b724cc1c47543589928ad2306a7402
ENCFF553LLN.tabix.bed.gz.tbi 194.91 KB bc7a71448236d1918dfd6d27585f56d8
genomic_resource.yaml 2.28 KB 35f4bb8c9eebeb45bf4cc6666183d121
statistics/