Resource

Id DNase-seq/ENCSR635GDWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR635GDW [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (79 years)"]
Description
Labels
  • accession: ENCSR635GDW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (79 years)
  • date_created: 2021-04-01T15:48:57.880797+00:00
  • date_released: 2021-06-17
  • doi: 10.17989/ENCSR635GDW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (79 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR635GDW float

DNase-seq_ENCSR635GDW
DNase-seq ENCSR635GDW [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (79 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR635GDW [0.0826, 36.4]
n
15,803,996
mean
2.87
sd
3.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 158039960.49% 82684
chr1 1495030 0.60% 7788
chr2 1141392 0.47% 6079
chr3 846046 0.43% 4401
chr4 600997 0.32% 3115
chr5 745232 0.41% 3932
chr6 764492 0.45% 4003
chr7 822319 0.52% 4287
chr8 648317 0.45% 3442
chr9 723644 0.52% 3783
chr10 805418 0.60% 4221
chr11 915056 0.68% 4823
chr12 713784 0.54% 3669
chr13 305913 0.27% 1603
chr14 526351 0.49% 2733
chr15 513485 0.50% 2727
chr16 645154 0.71% 3407
chr17 859881 1.03% 4512
chr18 297924 0.37% 1575
chr19 827032 1.41% 4160
chr20 497225 0.77% 2638
chr21 219093 0.47% 1154
chr22 527761 1.04% 2756
chrX 362115 0.23% 1873
chrY 335 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82684 1 1172 191.14 180
global segment-length histogram

Files

Filename Size md5
ENCFF692HIA.bed.gz 907.98 KB 751f9ef4b04b96f503d3fb00e11c58c3
ENCFF692HIA.tabix.bed.gz 827.4 KB 7bf7ea256b33cd34d8f485a3d01c3aa3
ENCFF692HIA.tabix.bed.gz.tbi 312.3 KB 7bdbeca86af849004fe3ace09bf24e41
genomic_resource.yaml 1.26 KB 64e950092c14b1abd57393ee284f6a81
statistics/