Resource
| Id | DNase-seq/ENCSR632ONQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR632ONQ [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF816ANC|/files/ENCFF816ANC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR632ONQ | float |
DNase-seq_ENCSR632ONQ |
DNase-seq ENCSR632ONQ [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)"]
|
 |
[0.0388, 11.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36043085 | 1.12% | 166110 |
| chr1 | 3112148 | 1.25% | 14131 |
| chr2 | 3341780 | 1.38% | 15131 |
| chr3 | 1552148 | 0.78% | 7224 |
| chr4 | 1073694 | 0.56% | 4869 |
| chr5 | 1665468 | 0.92% | 7638 |
| chr6 | 1317403 | 0.77% | 6263 |
| chr7 | 2124407 | 1.33% | 9794 |
| chr8 | 1535297 | 1.06% | 6937 |
| chr9 | 1604160 | 1.16% | 7385 |
| chr10 | 2342337 | 1.75% | 10727 |
| chr11 | 2083706 | 1.54% | 9342 |
| chr12 | 1378475 | 1.03% | 6606 |
| chr13 | 722366 | 0.63% | 3382 |
| chr14 | 1195671 | 1.12% | 5515 |
| chr15 | 1338495 | 1.31% | 6202 |
| chr16 | 1521485 | 1.68% | 7129 |
| chr17 | 2015618 | 2.42% | 9447 |
| chr18 | 648904 | 0.81% | 3045 |
| chr19 | 1264354 | 2.16% | 5992 |
| chr20 | 1244627 | 1.93% | 5823 |
| chr21 | 596132 | 1.28% | 2722 |
| chr22 | 1497604 | 2.95% | 6611 |
| chrX | 865379 | 0.55% | 4184 |
| chrY | 1427 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 166110 | 1 | 1180 | 216.98 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF977IJW.bed.gz | 1.56 MB | bd1c4a186de5b9b757207426648e0460 |
| ENCFF977IJW.tabix.bed.gz | 1.49 MB | 755b01a2c237ebae28557103aa7a6e3d |
| ENCFF977IJW.tabix.bed.gz.tbi | 251.87 KB | 39fac2dd45d115879018f76c1ad2bbc3 |
| genomic_resource.yaml | 2.08 KB | f541bd0a1ad2577bba2c5cfb19c8c352 |
| statistics/ |