Resource

Id DNase-seq/ENCSR631XIFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR631XIF [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR631XIF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-03-30T19:01:14.846212+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR631XIF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR631XIF float

DNase-seq_ENCSR631XIF

DNase-seq ENCSR631XIF [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR631XIF [0.0636, 68.9]
n
13,732,605
mean
4.37
sd
6.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 137326050.43% 74471
chr1 1353801 0.54% 7345
chr2 980406 0.40% 5348
chr3 756663 0.38% 4096
chr4 485336 0.26% 2620
chr5 617650 0.34% 3398
chr6 792656 0.46% 4291
chr7 638885 0.40% 3490
chr8 519273 0.36% 2858
chr9 552963 0.40% 3053
chr10 642213 0.48% 3484
chr11 693377 0.51% 3784
chr12 705101 0.53% 3815
chr13 282935 0.25% 1532
chr14 477937 0.45% 2605
chr15 441955 0.43% 2422
chr16 560427 0.62% 3012
chr17 821661 0.99% 4383
chr18 235650 0.29% 1286
chr19 829294 1.41% 4371
chr20 409790 0.64% 2249
chr21 176346 0.38% 937
chr22 348098 0.68% 1877
chrX 410188 0.26% 2215
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74471 1 960 184.4 180
global segment-length histogram

Files

Filename Size md5
ENCFF533WKA.bed.gz 835.98 KB b18214fa8559f6b35058c7dd903ccb4e
ENCFF533WKA.tabix.bed.gz 761.67 KB c72c387bd3b34d0822b73c1d2e25a658
ENCFF533WKA.tabix.bed.gz.tbi 302.27 KB cf298edddf935de7f7b3d805a8b752ce
genomic_resource.yaml 1.19 KB 0f9659b93e0f4e406ad909762178a33c
statistics/