Resource

Id DNase-seq/ENCSR627QIAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR627QIA [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
Description
Labels
  • accession: ENCSR627QIA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (28 years)
  • date_created: 2020-04-12T18:59:14.383685+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR627QIA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (28 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR627QIA float

DNase-seq_ENCSR627QIA

DNase-seq ENCSR627QIA [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
HISTOGRAM FOR DNase-seq_ENCSR627QIA [0.166, 130]
n
9,628,545
mean
9.24
sd
13.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96285450.30% 54758
chr1 951263 0.38% 5430
chr2 674201 0.28% 3850
chr3 518340 0.26% 2992
chr4 338882 0.18% 1932
chr5 432016 0.24% 2473
chr6 555770 0.33% 3141
chr7 441666 0.28% 2541
chr8 357148 0.25% 2045
chr9 388545 0.28% 2205
chr10 429630 0.32% 2473
chr11 493444 0.37% 2812
chr12 488028 0.37% 2770
chr13 200197 0.18% 1137
chr14 338329 0.32% 1914
chr15 315044 0.31% 1804
chr16 406707 0.45% 2293
chr17 586215 0.70% 3303
chr18 155151 0.19% 894
chr19 627059 1.07% 3427
chr20 272326 0.42% 1568
chr21 117612 0.25% 665
chr22 235876 0.46% 1350
chrX 294751 0.19% 1682
chrY 10345 0.02% 57
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54758 1 660 175.84 178
global segment-length histogram

Files

Filename Size md5
ENCFF277YPZ.bed.gz 617.79 KB 3b8737f74e263af7a4a885b9b364a9ad
ENCFF277YPZ.tabix.bed.gz 561.67 KB bbeb86a63d935b383e1213d683a8f509
ENCFF277YPZ.tabix.bed.gz.tbi 254.81 KB be857e60b02636b5645a53f29bfadb1f
genomic_resource.yaml 1.18 KB 5b23a8e46ab3fa693a1f0a2721ff315d
statistics/