Resource

Id DNase-seq/ENCSR622TWScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR622TWS [biosample_summary="Homo sapiens fibroblast of skin of abdomen male embryo (97 days)"]
Description
Labels
  • accession: ENCSR622TWS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000013/
  • biosample_summary: Homo sapiens fibroblast of skin of abdomen male embryo (97 days)
  • date_created: 2015-09-16T21:42:13.111651+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR622TWS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR622TWS float

DNase-seq_ENCSR622TWS
DNase-seq ENCSR622TWS [biosample_summary="Homo sapiens fibroblast of skin of abdomen male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR622TWS [5, 1.88e+05]
n
47,461,265
mean
310
sd
737

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 474612651.48% 316197
chr1 4250884 1.71% 28323
chr2 4037194 1.67% 26901
chr3 3373736 1.70% 22477
chr4 2791323 1.47% 18598
chr5 2989093 1.65% 19905
chr6 3014908 1.77% 20089
chr7 2422949 1.52% 16146
chr8 2322797 1.60% 15475
chr9 2005928 1.45% 13362
chr10 2296191 1.72% 15297
chr11 2306894 1.71% 15371
chr12 2298307 1.72% 15308
chr13 1445327 1.26% 9628
chr14 1441861 1.35% 9602
chr15 1526498 1.50% 10173
chr16 1263787 1.40% 8424
chr17 1614583 1.94% 10757
chr18 1200849 1.49% 8000
chr19 996547 1.70% 6642
chr20 1096839 1.70% 7304
chr21 588450 1.26% 3918
chr22 641732 1.26% 4279
chrX 1449088 0.93% 9649
chrY 85500 0.15% 569
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 316197 31 450 150.1 150
global segment-length histogram

Files

Filename Size md5
ENCFF542CPB.bed.gz 3.0 MB 5866b20b5ac41116b3c06a696c77c50c
ENCFF542CPB.tabix.bed.gz 2.61 MB 69b50d2becd71b56d759ea0bbee63949
ENCFF542CPB.tabix.bed.gz.tbi 809.06 KB a7cd57434190e2628fa894cf5b6a3af4
genomic_resource.yaml 1.43 KB a43157b4266751368f128abd541ade8a
statistics/