Resource

Id DNase-seq/ENCSR622HTScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR622HTS [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR622HTS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002078/
  • biosample_summary: Homo sapiens right cardiac atrium tissue female adult (59 years)
  • date_created: 2019-11-01T19:05:04.389914+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR622HTS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR622HTS float

DNase-seq_ENCSR622HTS
DNase-seq ENCSR622HTS [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR622HTS [0.0563, 51]
n
20,542,224
mean
3.09
sd
4.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 205422240.64% 112092
chr1 1950818 0.78% 10603
chr2 1470081 0.61% 8151
chr3 1108105 0.56% 6168
chr4 776422 0.41% 4267
chr5 986266 0.54% 5485
chr6 935721 0.55% 5229
chr7 991599 0.62% 5412
chr8 906051 0.62% 5055
chr9 1014388 0.73% 5533
chr10 998155 0.75% 5536
chr11 1237112 0.92% 6582
chr12 958918 0.72% 5219
chr13 407071 0.36% 2261
chr14 676330 0.63% 3624
chr15 644516 0.63% 3619
chr16 873376 0.97% 4700
chr17 1122422 1.35% 5999
chr18 370021 0.46% 2100
chr19 1047162 1.79% 5434
chr20 651704 1.01% 3566
chr21 383006 0.82% 1964
chr22 580798 1.14% 3070
chrX 451762 0.29% 2511
chrY 420 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 112092 3 880 183.26 180
global segment-length histogram

Files

Filename Size md5
ENCFF961TWL.bed.gz 1.21 MB fe4579aea528f441408c22a671f7b89c
ENCFF961TWL.tabix.bed.gz 1.1 MB 2517baaf01b0480547024912287ced79
ENCFF961TWL.tabix.bed.gz.tbi 382.25 KB cf67dabf6208f628fc34afbb6fe057bf
genomic_resource.yaml 1.25 KB 48843116b64c5e74dfc0577eada2b0ae
statistics/