Resource

Id DNase-seq/ENCSR622CAHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR622CAH [biosample_summary="Homo sapiens muscle of leg tissue male embryo (127 days)"]
Description
Labels
  • accession: ENCSR622CAH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue male embryo (127 days)
  • date_created: 2015-09-16T21:42:37.385382+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR622CAH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (127 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR622CAH float

DNase-seq_ENCSR622CAH

DNase-seq ENCSR622CAH [biosample_summary="Homo sapiens muscle of leg tissue male embryo (127 days)"]
HISTOGRAM FOR DNase-seq_ENCSR622CAH [0.273, 49]
n
10,420,097
mean
4.21
sd
4.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104200970.32% 58519
chr1 942996 0.38% 5240
chr2 828391 0.34% 4688
chr3 668885 0.34% 3785
chr4 512160 0.27% 2905
chr5 585568 0.32% 3356
chr6 627309 0.37% 3518
chr7 508886 0.32% 2900
chr8 493793 0.34% 2819
chr9 450858 0.33% 2502
chr10 496902 0.37% 2792
chr11 555818 0.41% 3116
chr12 518455 0.39% 2908
chr13 277650 0.24% 1601
chr14 335218 0.31% 1878
chr15 339057 0.33% 1910
chr16 336908 0.37% 1873
chr17 432457 0.52% 2391
chr18 217816 0.27% 1263
chr19 425085 0.73% 2179
chr20 272617 0.42% 1536
chr21 128635 0.28% 730
chr22 180271 0.35% 1021
chrX 277142 0.18% 1564
chrY 7220 0.01% 44
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58519 3 800 178.06 180
global segment-length histogram

Files

Filename Size md5
ENCFF570VFR.bed.gz 626.81 KB df4bf75310179e79fcdc17467e439e7d
ENCFF570VFR.tabix.bed.gz 557.68 KB 6ed70827313981970afab0949523d1d0
ENCFF570VFR.tabix.bed.gz.tbi 319.8 KB f02cd7569e6fb8bee04ecdb166b1f93e
genomic_resource.yaml 1.84 KB 40354b01d8a144c6a4c00af8b0317be7
statistics/